Index

A

analyzeWithFullyPivotedLU() (LibStructural method) analyzeWithFullyPivotedLUwithTests() (LibStructural method)

analyzeWithLU() (LibStructural method) analyzeWithLUandRunTests() (LibStructural method) analyzeWithQR() (LibStructural method)

G

getColumnReorderedNrMatrix() (LibStructural method) getColumnReorderedNrMatrixIds() (LibStructural method) getConditionNumber() (LibStructural method) getConservedLaws() (LibStructural method) getConservedSums() (LibStructural method) getDependentReactionIds() (LibStructural method) getDependentSpeciesIds() (LibStructural method) getEigenValues() (LibStructural method) getEigenVectors() (LibStructural method) getElementaryModesDouble() (LibStructural method) getElementaryModesInteger() (LibStructural method) getElementaryModesMetaToolRxnIds() (LibStructural method) getFloatingSpeciesIds() (LibStructural method) getFullyReorderedN0StoichiometryMatrix() (LibStructural method) getFullyReorderedNrMatrix() (LibStructural method) getFullyReorderedStoichiometryMatrix() (LibStructural method) getFullyReorderedStoichiometryMatrixIds() (LibStructural method) getGammaMatrix() (LibStructural method) getGammaMatrixGJ() (LibStructural method) getGammaMatrixIds() (LibStructural method) getgElementaryModes() (LibStructural method) getIndependentReactionIds() (LibStructural method) getIndependentSpeciesIds() (LibStructural method) getInitialConditions() (LibStructural method) getInstance() (LibStructural static method) getK0Matrix() (LibStructural method) getK0MatrixIds() (LibStructural method) getKMatrix() (LibStructural method) getKMatrixIds() (LibStructural method) getL0Matrix() (LibStructural method) getL0MatrixIds() (LibStructural method)

getLeftNullSpace() (LibStructural method) getLinkMatrix() (LibStructural method) getLinkMatrixIds() (LibStructural method) getModelName() (LibStructural method) getN0Matrix() (LibStructural method) getN0MatrixIds() (LibStructural method) getNDCMatrix() (LibStructural method) getNDCMatrixIds() (LibStructural method) getNICMatrix() (LibStructural method) getNICMatrixIds() (LibStructural method) getNmatrixSparsity() (LibStructural method) getNrMatrix() (LibStructural method) getNrMatrixIds() (LibStructural method) getNumDepReactions() (LibStructural method) getNumDepSpecies() (LibStructural method) getNumIndReactions() (LibStructural method) getNumIndSpecies() (LibStructural method) getNumReactions() (LibStructural method) getRank() (LibStructural method) getRConditionNumber() (LibStructural method) getReactionIds() (LibStructural method) getReorderedReactionIds() (LibStructural method) getReorderedSpeciesIds() (LibStructural method) getReorderedStoichiometryMatrix() (LibStructural method) getReorderedStoichiometryMatrixIds() (LibStructural method) getRightNullSpace() (LibStructural method) getStoichiometryMatrix() (LibStructural method) getStoichiometryMatrixBoundary() (LibStructural method) getStoichiometryMatrixIds() (LibStructural method) getSummary() (LibStructural method) getTestDetails() (LibStructural method) getTolerance() (LibStructural method)

I

isReactionReversible() (LibStructural method)

L

LibStructural (class in structural) loadReactionIdsWithValues() (LibStructural method) loadSBMLFromFile() (LibStructural method)

loadSBMLFromString() (LibStructural method) loadSBMLwithTests() (LibStructural method) loadSpeciesIdsWithValues() (LibStructural method) loadStoichiometryMatrix() (LibStructural method)

R

rref() (LibStructural method) rref_FB() (LibStructural method)

runElementaryModeTests() (LibStructural method) runLibstructTests() (LibStructural method)

S

saveElementaryModes() (LibStructural method)

setTolerance() (LibStructural method)

V

validateStructuralMatrices() (LibStructural method)